I'm not sure about the hybrid theory, but since nobody can trace the common BN back to any wild-caught species it's possible that they're the convicts of the Ancistrus genus. However, it seems to me the calico and super reds are just browns with less brown pigment. Just like dog fur, the colors are all there, but depending on the genes some aren't always visible, and in regular browns the red is covered completely. While albino's lack the genes for pigment, why couldn't the super red in particular have an underactive brown pigment gene? I have noticed that at least some calico's have dark brown bellies, as opposed to the browns with lighter colored bellies, and the super reds also have a lighter colored belly. Different distribution of pigment?
The other thing that gets me, the super red strain originated from brown stock in Germany a few years ago. I have been breeding some from that line in other tanks. I had the original brown breeding stock long before anyone had even heard about the super reds in the US, and there certainly weren't any super reds from Germany in their family tree. The super reds from their offspring must have turned up the same way as the German stock originated. Incidentally, the largest and best-looking male from the German stock produced all brown fry when bred with (the only) 2 females from the same line. I sold him along with a couple other extra males. There were 2 smaller males left that did eventually grow as large, just more slowly, that do produce all super red fry.
Even among the line-bred super reds I've seen quite a bit of variation in growth rate and sexual maturity size. Some males grow quite a snoutfull of "bristles" at a much smaller size than others, and I've found new fry in growout tanks from fish I would have thought months away from spawning size.